Basic and intermediate concepts of programming in Python and R: data structures, conditions, loops, data input/output, analysis and visualization. Using git + quarto and focusing on good programming principles.
This course is open to anyone, but taylored to the HPI master program Digital Health.
Language: English
Course information
Welcome to the course "fundamentals of programming for digital health" by Berry Boessenkool at the chair of Bert Arnrich, Digital Health Cluster, Hasso Plattner Institute in Potsdam.
The videos and autograded exercises in this course aim to make you a great coder following good programming practices.
The course is open to anyone. The tutorial sessions are primarily aimed at the Digital Health master students, but usually some seats are still available, so while the course is running, feel free to join :).
The course is set up to technically require no previous programming skills. However, if you have little coding experience but try to get 100% score in the weekly exercises, you may have to spend more time on this course than expected by the credit points. The weekly time requirement was between 7 and 11 hours for most participants in past years.
You can prepare for R ahead of the semester with my short R course if wanted.
You can get a headstart on the first week with the software installation guide if wanted.
The lectures are presented in short online videos accompanied by interactive programming exercises through CodeOcean. They can be watched / solved at your own time and pace.
The tutorial sessions take place in person on Tuesdays (11:00-12:30) in G2.U.10 (Campus III, Digital Health Cluster, basement floor).
On Mondays (13:30-15:00), you can work on exercises together, with Berry present for questions (same room).
The course grade is based on weekly exercises, an individual coding project and an oral exam, see the grading info.
The course slides are tentatively available, see below for an overview of the contents.
Course contents
-
I1: infrastructure:
course info, IDEs, git, markdown, interactive exercises (released Oct 13, exercises due Oct 26) -
P1: intro & functions:
Python intro, syntax, data types, character strings, writing functions (Oct 19 - 26) -
P2: objects:
Collections (overview), lists, sets, tuples, dictionaries (Oct 26 - Nov 02) -
P3: loops:
conditional code execution, loops, list comprehension (Nov 02 - 09) -
P4: programming:
managing errors, writing classes, unit tests (Nov 9 - 16) -
P5: data science:
numpy, pandas, missing values, applications (Nov 16 - 23) -
Python practice:
exercises covering all course python content -
R1: intro:
welcome, showcase, Rstudio configuration, syntax, help, vectors (Nov 23- 30) -
R2: basics:
statistics, functions, conditions, packages (Nov 30 - Dec 07) -
R3: data types:
logicals, charstrings, categories, overview (Dec 07- 14) -
R4: objects:
data.frame, matrix, list, array (Dec 14 - Jan 04) -
Christmas break vacation:
two weeks :) -
R5: real data:
read, merge, missing values, AI-coding (Jan 04 - 11) -
R6: plots:
scatterplots, line plots, barplots, low level commands (Jan 11 - 18) -
R7: figures:
composition, histograms, boxplots, exporting, outlook (Jan 18 - 25) -
R8: flow control:
debugging functions, loops (Jan 25 - Feb 01) -
R practice:
exercises covering all course R content
Enroll me for this course
Our teachers
Berry Boessenkool
Berry Boessenkool has been teaching R courses in various formats since 2012. He is a freelance R trainer and consultant and works part-time as a lecturer at HPI. His passion for programming was sparked in his studies of geoecology and the analysis of environmental data is still close to his heart.
Prof. Dr. Bert Arnrich
Prof. Dr.-Ing. Bert Arnrich is Professor for Digital Health – Connected Healthcare at the Digital Health Center of the Hasso Plattner Institute.
His research on ubiquitous sensing and computing technologies is directed towards paving the way for transforming healthcare systems from purely managing illness to maintaining wellness everywhere, anytime and for anyone. He has been a PI in several European and national projects. He has co-authored over 120 refereed research publications.
He studied "Informatics in the Natural Sciences" and received the PhD degree Dr.-Ing. for the thesis "Data Mart Based Research in Heart Surgery" from Bielefeld University in 2006. He established and headed the research group Pervasive Healthcare in the Wearable Computing Laboratory at ETH Zurich between 2006 and 2013. He received an EU FP7 Marie Curie Cofound Fellowship in 2013 and was appointed to tenure track professorship at the Computer Engineering Department at Bosporus University until 2017. Between 2017 and 2018 he worked as a Science Manager for Emerging Technologies at Accenture Technology Solutions.